Brain Metastasis & Leptomeningeal Disease

Introduction

Melanoma is the third most common source of brain metastases (BM), exceeded only by lung and breast cancer. In addition, metastatic melanoma cells have the highest propensity for settling in the brain out of any solid tumor1. Melanoma also has one of the highest rates of leptomeningeal disease (LMD), which occurs when melanoma spreads to the cerebrospinal fluid (CSF) and the membranes that surround the brain and spinal cord. LMD is generally associated with a short survival of weeks to months2. With the advent of targeted drug therapy, checkpoint immunotherapy, cell-based therapy, and targeted radiation therapy, the median survival of patients with melanoma BM has improved but still only a subset of these patients respond to these treatments. For patients with LMD, improvements in survival from the new therapies show less impact. A high unmet medical need to identify new treatment options for patients with melanoma BM and LMD persists. 

To improve outcomes for patients with melanoma BM and LMD, several important research areas are being explored. Characterizing the unique neurological environment that attracts and enables melanoma cells to grow in the brain and CSF is important to understand the high propensity for melanoma to spread to these tissues. Understanding biological distinctions between metastases to the brain and CSF compared to metastasis to other organs, like the liver or lungs, can also provide insight as to the uniqueness of BM and LMD. Finding ways to treat melanoma BMs when they first reach the brain and prevent them from growing are other avenues being actively explored. Identifying new targets to develop novel therapies and combination approaches and establishing the appropriate preclinical metastatic models for drug testing is also being extensively investigated. Furthermore, increasing enrollment of patients, especially with LMD and symptomatic BM, into clinical studies to test novel therapeutics is critical to advance clinical research of these diseases.

The Tumor Microenvironment of the Brain

When melanoma cells enter the brain, they interact with multiple brain cell types including astrocytes (supporting cells in the central nervous system [CNS]), oligodendrocytes (cells in the CNS that make myelin), microglia (brain-resident macrophages), and a limited number of other immune cells. Melanoma cells must adapt to this unique environment to survive and grow. Research supported by MRA involves understanding this tumor microenvironment (TME) that is very different from other places in the body to figure out how to exploit unique vulnerabilities with therapies.

Examples include...
  • Identifying how metabolic changes and the effects of aging in astrocytes and other cells in the TME of the brain result in the spread of melanoma to the brain and subsequent growth of metastatic melanoma.
  • Understanding the effects of aging on the blood brain barrier (a protective wall that normally prevents harmful substances from entering the brain), including how age makes this barrier leakier and easier for melanoma cells to enter the brain and ways to modulate this effect.
  • Modulating cells in the TME (immune and non-immune cells) of the brain to improve the response of melanoma BMs to immune therapies.

Treatment of Melanoma Brain Metastases

Patients who have brain metastases–with no neurologic symptoms (asymptomatic) and small tumors that are not in critical parts of the brain–may be treated with systemic therapy, especially the combination of the two immune checkpoint inhibitors, ipilimumab and nivolumab (encouraging overall survival results of the ABC clinical trial3). Patients with asymptomatic BMs are more likely to be included in clinical trials. However, the standard of care for patients with symptomatic BMs is not as clear and this patient population is less likely to be included in clinical studies. Preclinical work is focused on identifying new targets and therapies that would either boost the immune system’s ability to fight BMs or involve novel mechanisms and pathways to exploit therapeutically.

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Examples include...
  • Predicting who is at risk for BM could allow diagnosis of BM when they are small and easier to treat and could help focus efforts at finding treatments aimed at preventing BM.
  • Identifying biomarkers to predict the response to different treatments in patients with melanoma BM.
  • Targeting different inflammatory processes in the brain (neuroinflammatory) and other brain specific processes to prevent and/or inhibit melanoma metastasis.
  • Identifying better drugs that would cross the blood-brain barrier as exemplified by the combination of a new brain-penetrant BRAF inhibitor and a new brain-penetrant MEK inhibitor that was presented at the 2026 American Society of Clinical Oncology meeting.

Leptomeningeal Disease is a Unique Disease

Melanoma has one of the highest incidences of LMD among solid tumors with a very poor overall survival measured in weeks to a few months. A major challenge in treating patients with LMD is getting a reliable diagnosis due to a lack of clear diagnostic and response criteria. In addition, the biology of LMD is fundamentally distinct from that of BMs and it occurs in a different neurological microenvironment (the CSF versus the brain). Current research is aiming to understand the factors that distinguish LMD from BM. Examples include:

Examples include...
  • Identifying proteins and other factors in the blood and CSF to diagnose patients at high risk of developing LMD and/or diagnosing these patients earlier, preferably before onset of symptoms of LMD. 
  • Characterizing cells in the CSF that promote melanoma tumor growth and develop into LMD.
  • Developing new therapeutics for LMD including tumor infiltrating lymphocyte (TIL) cellular therapy that is produced from isolating and expanding immune T cells from the CSF. Characterization of the isolated T cells can lead to other types of immunotherapies that could be developed for this disease.
  • Evaluating immunotherapeutic strategies and combination approaches through intrathecal injections (direct injection of treatment into the CSF) into LMD-specific preclinical models to identify approaches that can be advanced into clinical trials4.

Joining Forces with other Cancers to Study Brain Metastases and LMD 

Like melanoma, other cancers including breast and lung cancer have the highest rates and propensity for spreading to the brain and developing LMD. Sharing information between researchers who study BM and LMD in other cancer types can provide a potential source of new targets and shared mechanisms of how the brain and CSF microenvironments support metastatic growth. Furthermore, sharing preclinical models of brain metastasis or LMD across cancer types is also needed as there are not many faithful models of these diseases. MRA strives to facilitate and support collaborative studies with researchers across cancer indications.

Medical Review
Reviewed by: Jessica Scales, PhD
‍Expertise: Associate Director, Rare Melanoma Research
Last medically reviewed: September 2026

References

1Redmer T. Deciphering mechanisms of brain metastasis in melanoma – the gist of the matter. Molecular Cancer  (2018).

2Oliva IG, Schvartsman G, Tawbi H. Advances in the systemic treatment of melanoma brain metastases. Annals of Oncology (2018).

3Long GV, Atkinson V, Lo Stez JR, Knighton BG, Ledesma DA, Hudgens CW, Delcid YF, Hu Q, Onana CYB, Carapeto FCL, Tezlaff MT, Huse JT, Hwu P, Burton EM, Glitza Oliva IC, Davies MA, Ferguson SD. Preclinical models of melanoma leptomeningeal disease to assess intrathecal checkpoint blockade. Scientific Reports (2025).

4Guerrieri RA, Fischer GM, Cortez JR, Knighton BG, Ledesma DA, Hudgens CW, Delcid YF, Hu Q, Onana CYB, Carapeto FCL, Tezlaff MT, Huse JT, Hwu P, Burton EM, Glitza Oliva IC, Davies MA, Ferguson SD. Preclinical models of melanoma leptomeningeal disease to assess intrathecal checkpoint blockade. Scientific Reports (2025).

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